I would have to dig through things code, but I am fairly sure you can proc on misses. (And that is by design, as far as I know.)
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"Hitting a Runed target is considered a "miss" until the rune is gone.
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although stuns like bash ... still landed through skin
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Bash is a melee attack that can miss...
So the only real change that you are requesting is that you are currently getting melee pushback while runed and you shouldn't be?